Examples
========

Below you will find a collection of example notebooks that show how to simulate
and visualize binding kinetics models with PyKinGenie.

.. toctree::
   :maxdepth: 1
   :caption: Example notebooks:

   One-site association and dissociation <notebooks/1_one_site_assoc_disso_simulation>
   One-site association and dissociation with mass transport <notebooks/2_one_site_assoc_disso_mass_transport_simulation>
   One-site induced fit <notebooks/3_one_site_induced_fit>
   One-site conformational selection <notebooks/4_one_site_conformational_selection>
   Heterogeneous analyte model <notebooks/5_heterogeneous_analyte_model>
   Heterogeneous ligand model <notebooks/6_heterogeneous_ligand_model>
   Two-site binding model <notebooks/7_two_site_model>
   Two-site binding model with cooperativity <notebooks/8_two_site_cooperativity_model>