Structure

• pyphotomol.main module
  • log_method()
  • log_batch_method()
  • PyPhotoMol
    • PyPhotoMol.contrasts
    • PyPhotoMol.masses
    • PyPhotoMol.histogram_centers
    • PyPhotoMol.hist_counts
    • PyPhotoMol.hist_nbins
    • PyPhotoMol.hist_window
    • PyPhotoMol.bin_width
    • PyPhotoMol.hist_data_type
    • PyPhotoMol.peaks_guess
    • PyPhotoMol.nbinding
    • PyPhotoMol.nunbinding
    • PyPhotoMol.fitted_params
    • PyPhotoMol.fitted_data
    • PyPhotoMol.fitted_params_errors
    • PyPhotoMol.masses_fitted
    • PyPhotoMol.baseline
    • PyPhotoMol.fit_table
    • PyPhotoMol.calibration_dic
    • PyPhotoMol.logbook
    • PyPhotoMol.get_logbook()
    • PyPhotoMol.clear_logbook()
    • PyPhotoMol.print_logbook_summary()
    • PyPhotoMol.import_file()
    • PyPhotoMol.count_binding_events()
    • PyPhotoMol.create_histogram()
    • PyPhotoMol.guess_peaks()
    • PyPhotoMol.contrasts_to_masses()
    • PyPhotoMol.fit_histogram()
    • PyPhotoMol.create_fit_table()
    • PyPhotoMol.calibrate()
  • MPAnalyzer
    • MPAnalyzer.get_batch_logbook()
    • MPAnalyzer.get_all_logbooks()
    • MPAnalyzer.import_files()
    • MPAnalyzer.apply_to_all()
    • MPAnalyzer.get_properties()
    • MPAnalyzer.create_plotting_config()
    • MPAnalyzer.master_calibration()
• pyphotomol.utils.data_import module
  • Functions
  • import_file_h5()
  • import_csv()
• pyphotomol.utils.helpers module
  • contrasts_to_mass()
  • create_histogram()
  • count_binding_events_from_masses()
  • count_binding_events_from_contrasts()
  • guess_peaks()
  • multi_gauss()
  • truncated_multi_gauss_with_baseline()
  • fit_histogram()
  • create_fit_table()
  • r_squared()
  • calibrate()
  • evaluate_fitting()
• pyphotomol.utils.palette module
• pyphotomol.utils.plotting module
  • PlotConfig
    • PlotConfig.plot_width
    • PlotConfig.plot_height
    • PlotConfig.plot_type
    • PlotConfig.font_size
    • PlotConfig.normalize
    • PlotConfig.contrasts
    • PlotConfig.cst_factor_for_contrast
    • PlotConfig.x_range
  • AxisConfig
    • AxisConfig.showgrid_x
    • AxisConfig.showgrid_y
    • AxisConfig.n_y_axis_ticks
    • AxisConfig.axis_linewidth
    • AxisConfig.axis_tickwidth
    • AxisConfig.axis_gridwidth
  • LayoutConfig
    • LayoutConfig.stacked
    • LayoutConfig.show_subplot_titles
    • LayoutConfig.vertical_spacing
    • LayoutConfig.shared_yaxes
    • LayoutConfig.extra_padding_y_label
  • LegendConfig
    • LegendConfig.add_masses_to_legend
    • LegendConfig.add_percentage_to_legend
    • LegendConfig.add_labels
    • LegendConfig.add_percentages
    • LegendConfig.line_width
  • config_fig()
  • create_axis_config()
  • add_histogram()
  • add_labels_to_fig()
  • add_values_in_legend()
  • add_gaussian_traces()
  • add_percentages_to_legend()
  • add_gaussian_simulation_to_plot()
  • plot_histograms_and_fits()
  • plot_histogram()
  • plot_calibration()