pykingenie
- pykingenie package
- Subpackages
- pykingenie.utils package
- Submodules
- pykingenie.utils.fitting_general module
- pykingenie.utils.fitting_solution module
- pykingenie.utils.fitting_surface module
- pykingenie.utils.math module
- pykingenie.utils.palettes module
- pykingenie.utils.plotting module
- pykingenie.utils.processing module
- pykingenie.utils.signal_solution module
- pykingenie.utils.signal_surface module
- pykingenie.utils package
- Submodules
- pykingenie.fitter module
- pykingenie.fitter_solution module
KineticsFitterSolutionKineticsFitterSolution.nameKineticsFitterSolution.assoc_lstKineticsFitterSolution.lig_concKineticsFitterSolution.prot_concKineticsFitterSolution.time_assoc_lstKineticsFitterSolution.signal_ssKineticsFitterSolution.signal_ss_fitKineticsFitterSolution.signal_assoc_fitKineticsFitterSolution.fit_params_kineticsKineticsFitterSolution.fit_params_ssKineticsFitterSolution.get_steady_state()KineticsFitterSolution.fit_single_exponentials()KineticsFitterSolution.group_k_obs_by_protein_concentration()KineticsFitterSolution.fit_double_exponentials()KineticsFitterSolution.group_double_exponential_k_obs_by_protein_concentration()KineticsFitterSolution.fit_one_binding_site()KineticsFitterSolution.find_initial_params_if()KineticsFitterSolution.fit_induced_fit()KineticsFitterSolution.find_initial_params_cs()KineticsFitterSolution.fit_conformational_selection()KineticsFitterSolution.create_export_df()
- pykingenie.fitter_surface module
KineticsFitterKineticsFitter.namesKineticsFitter.assoc_lstKineticsFitter.disso_lstKineticsFitter.lig_conc_lstKineticsFitter.time_assoc_lstKineticsFitter.time_disso_lstKineticsFitter.is_single_cycleKineticsFitter.signal_ssKineticsFitter.signal_ss_fitKineticsFitter.signal_assoc_fitKineticsFitter.signal_disso_fitKineticsFitter.lig_conc_lst_per_idKineticsFitter.smax_guesses_unqKineticsFitter.smax_guesses_sharedKineticsFitter.fit_params_kineticsKineticsFitter.fit_params_ssKineticsFitter.get_steady_state()KineticsFitter.fit_steady_state_one_site()KineticsFitter.fit_steady_state()KineticsFitter.fit_steady_state_two_site_heterogeneous_ligand()KineticsFitter.fit_steady_state_two_site()KineticsFitter.get_k_off_initial_guess()KineticsFitter.fit_one_site_association()KineticsFitter.fit_one_site_dissociation()KineticsFitter.fit_single_exponentials()KineticsFitter.fit_one_site_assoc_and_disso()KineticsFitter.fit_two_site_assoc_and_disso()KineticsFitter.fit_two_site_heterogeneous_ligand_assoc_and_disso()KineticsFitter.calculate_ci95()KineticsFitter.fit_one_site_if_assoc_and_disso()KineticsFitter.create_export_df()
- pykingenie.gator module
- pykingenie.kingenie_solution module
- pykingenie.kingenie_surface module
- pykingenie.main module
KineticsAnalyzerKineticsAnalyzer.delete_experiment()KineticsAnalyzer.add_experiment()KineticsAnalyzer.collapse_solution_experiments()KineticsAnalyzer.init_fittings()KineticsAnalyzer.add_fitting()KineticsAnalyzer.get_experiment_properties()KineticsAnalyzer.merge_ligand_conc_df()KineticsAnalyzer.merge_conc_df_solution()KineticsAnalyzer.generate_fittings()KineticsAnalyzer.generate_fittings_solution()KineticsAnalyzer.submit_steady_state_fitting()KineticsAnalyzer.submit_fitting_solution()KineticsAnalyzer.submit_kinetics_fitting()KineticsAnalyzer.calculate_asymmetric_error()KineticsAnalyzer.get_fitting_results()KineticsAnalyzer.get_legends_table()KineticsAnalyzer.create_export_df()
- pykingenie.octet module
OctetExperimentOctetExperiment.nameOctetExperiment.fnsOctetExperiment.xsOctetExperiment.ysOctetExperiment.exp_infoOctetExperiment.step_infoOctetExperiment.no_stepsOctetExperiment.no_sensorsOctetExperiment.sample_columnOctetExperiment.sample_rowOctetExperiment.sample_typeOctetExperiment.sample_idOctetExperiment.sensor_names_uniqueOctetExperiment.sensor_namesOctetExperiment.df_stepsOctetExperiment.ligand_conc_dfOctetExperiment.ligand_conc_df.headOctetExperiment.traces_loadedOctetExperiment.sample_plate_loadedOctetExperiment.sample_concOctetExperiment.sample_conc_labeledOctetExperiment.steps_performedOctetExperiment.steps_performed.headOctetExperiment.read_sensor_data()OctetExperiment.generate_ligand_conc_df()OctetExperiment.merge_consecutive_steps()OctetExperiment.merge_consecutive_steps_by_name()OctetExperiment.read_sample_plate_info()OctetExperiment.convert_to_numbers()
- pykingenie.solution_exp module
SolutionBasedExpSolutionBasedExp.nameSolutionBasedExp.typeSolutionBasedExp.xsSolutionBasedExp.ysSolutionBasedExp.no_tracesSolutionBasedExp.traces_namesSolutionBasedExp.traces_names_uniqueSolutionBasedExp.conc_dfSolutionBasedExp.traces_loadedSolutionBasedExp.create_unique_traces_names()SolutionBasedExp.cut_off_time()SolutionBasedExp.get_trace_xy()
- pykingenie.surface_exp module
SurfaceBasedExperimentSurfaceBasedExperiment.nameSurfaceBasedExperiment.typeSurfaceBasedExperiment.xsSurfaceBasedExperiment.ysSurfaceBasedExperiment.sensor_namesSurfaceBasedExperiment.ligand_conc_dfSurfaceBasedExperiment.df_stepsSurfaceBasedExperiment.steps_performedSurfaceBasedExperiment.traces_loadedSurfaceBasedExperiment.sample_plate_loadedSurfaceBasedExperiment.create_unique_sensor_names()SurfaceBasedExperiment.check_sensor_name()SurfaceBasedExperiment.subtraction_one_to_one()SurfaceBasedExperiment.subtraction()SurfaceBasedExperiment.average()SurfaceBasedExperiment.align_association()SurfaceBasedExperiment.subtract_experiment()SurfaceBasedExperiment.subtraction_by_column()SurfaceBasedExperiment.align_dissociation()SurfaceBasedExperiment.discard_steps()SurfaceBasedExperiment.get_step_xy()
- Subpackages