Index

A

add_gaussian_simulation_to_plot() (in module pyphotomol.utils.plotting) add_gaussian_traces() (in module pyphotomol.utils.plotting) add_histogram() (in module pyphotomol.utils.plotting) add_labels (pyphotomol.utils.plotting.LegendConfig attribute) add_labels_to_fig() (in module pyphotomol.utils.plotting) add_masses_to_legend (pyphotomol.utils.plotting.LegendConfig attribute) add_percentage_to_legend (pyphotomol.utils.plotting.LegendConfig attribute)

add_percentages (pyphotomol.utils.plotting.LegendConfig attribute) add_percentages_to_legend() (in module pyphotomol.utils.plotting) add_values_in_legend() (in module pyphotomol.utils.plotting) apply_to_all() (pyphotomol.main.MPAnalyzer method) axis_gridwidth (pyphotomol.utils.plotting.AxisConfig attribute) axis_linewidth (pyphotomol.utils.plotting.AxisConfig attribute) axis_tickwidth (pyphotomol.utils.plotting.AxisConfig attribute) AxisConfig (class in pyphotomol.utils.plotting)

B

baseline (pyphotomol.main.PyPhotoMol attribute)

bin_width (pyphotomol.main.PyPhotoMol attribute)

C

calibrate() (in module pyphotomol.utils.helpers) (pyphotomol.main.PyPhotoMol method) calibration_dic (pyphotomol.main.PyPhotoMol attribute) clear_logbook() (pyphotomol.main.PyPhotoMol method) config_fig() (in module pyphotomol.utils.plotting) contrasts (pyphotomol.main.PyPhotoMol attribute) (pyphotomol.utils.plotting.PlotConfig attribute) contrasts_to_mass() (in module pyphotomol.utils.helpers) contrasts_to_masses() (pyphotomol.main.PyPhotoMol method)

count_binding_events() (pyphotomol.main.PyPhotoMol method) count_binding_events_from_contrasts() (in module pyphotomol.utils.helpers) count_binding_events_from_masses() (in module pyphotomol.utils.helpers) create_axis_config() (in module pyphotomol.utils.plotting) create_fit_table() (in module pyphotomol.utils.helpers) (pyphotomol.main.PyPhotoMol method) create_histogram() (in module pyphotomol.utils.helpers) (pyphotomol.main.PyPhotoMol method) create_plotting_config() (pyphotomol.main.MPAnalyzer method) cst_factor_for_contrast (pyphotomol.utils.plotting.PlotConfig attribute)

E

evaluate_fitting() (in module pyphotomol.utils.helpers)

extra_padding_y_label (pyphotomol.utils.plotting.LayoutConfig attribute)

F

fit_histogram() (in module pyphotomol.utils.helpers) (pyphotomol.main.PyPhotoMol method) fit_table (pyphotomol.main.PyPhotoMol attribute)

fitted_data (pyphotomol.main.PyPhotoMol attribute) fitted_params (pyphotomol.main.PyPhotoMol attribute) fitted_params_errors (pyphotomol.main.PyPhotoMol attribute) font_size (pyphotomol.utils.plotting.PlotConfig attribute)

G

get_all_logbooks() (pyphotomol.main.MPAnalyzer method) get_batch_logbook() (pyphotomol.main.MPAnalyzer method) get_logbook() (pyphotomol.main.PyPhotoMol method)

get_properties() (pyphotomol.main.MPAnalyzer method) guess_peaks() (in module pyphotomol.utils.helpers) (pyphotomol.main.PyPhotoMol method)

H

hist_counts (pyphotomol.main.PyPhotoMol attribute) hist_data_type (pyphotomol.main.PyPhotoMol attribute)

hist_nbins (pyphotomol.main.PyPhotoMol attribute) hist_window (pyphotomol.main.PyPhotoMol attribute) histogram_centers (pyphotomol.main.PyPhotoMol attribute)

I

import_csv() (in module pyphotomol.utils.data_import) import_file() (pyphotomol.main.PyPhotoMol method)

import_file_h5() (in module pyphotomol.utils.data_import) import_files() (pyphotomol.main.MPAnalyzer method)

L

LayoutConfig (class in pyphotomol.utils.plotting) LegendConfig (class in pyphotomol.utils.plotting) line_width (pyphotomol.utils.plotting.LegendConfig attribute)

log_batch_method() (in module pyphotomol.main) log_method() (in module pyphotomol.main) logbook (pyphotomol.main.PyPhotoMol attribute)

M

masses (pyphotomol.main.PyPhotoMol attribute) masses_fitted (pyphotomol.main.PyPhotoMol attribute) master_calibration() (pyphotomol.main.MPAnalyzer method) module pyphotomol.main pyphotomol.utils.data_import pyphotomol.utils.helpers pyphotomol.utils.palette pyphotomol.utils.plotting

MPAnalyzer (class in pyphotomol.main) multi_gauss() (in module pyphotomol.utils.helpers)

N

n_y_axis_ticks (pyphotomol.utils.plotting.AxisConfig attribute) nbinding (pyphotomol.main.PyPhotoMol attribute)

normalize (pyphotomol.utils.plotting.PlotConfig attribute) nunbinding (pyphotomol.main.PyPhotoMol attribute)

P

peaks_guess (pyphotomol.main.PyPhotoMol attribute) plot_calibration() (in module pyphotomol.utils.plotting) plot_height (pyphotomol.utils.plotting.PlotConfig attribute) plot_histogram() (in module pyphotomol.utils.plotting) plot_histograms_and_fits() (in module pyphotomol.utils.plotting) plot_type (pyphotomol.utils.plotting.PlotConfig attribute) plot_width (pyphotomol.utils.plotting.PlotConfig attribute) PlotConfig (class in pyphotomol.utils.plotting) print_logbook_summary() (pyphotomol.main.PyPhotoMol method) PyPhotoMol (class in pyphotomol.main)

pyphotomol.main module pyphotomol.utils.data_import module pyphotomol.utils.helpers module pyphotomol.utils.palette module pyphotomol.utils.plotting module

R

r_squared() (in module pyphotomol.utils.helpers)

S

shared_yaxes (pyphotomol.utils.plotting.LayoutConfig attribute) show_subplot_titles (pyphotomol.utils.plotting.LayoutConfig attribute)

showgrid_x (pyphotomol.utils.plotting.AxisConfig attribute) showgrid_y (pyphotomol.utils.plotting.AxisConfig attribute) stacked (pyphotomol.utils.plotting.LayoutConfig attribute)

T

truncated_multi_gauss_with_baseline() (in module pyphotomol.utils.helpers)

V

vertical_spacing (pyphotomol.utils.plotting.LayoutConfig attribute)

X

x_range (pyphotomol.utils.plotting.PlotConfig attribute)